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From 2012.igem.org

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Modeling Targets
Germination

1. Effects of h2o and L-alanine concentrations on germination rate.

Volatile production

1. Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)

Normal operation

1. Receptor sensitivities
   • Binding rate as a function of volatile concentration (TAAR5)
2. Diffusion rates
   • Through the membrane (nh4_diffusion, h_diffusion)
   • Through ion channels (nh4_ion)
3. Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
4. Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
5. Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
6. Opacity as a function of lycopene concentration

OMIX visualization through reaction pathways