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Team:Grenoble/Modeling/Notebook/June/25 - Revision history
2024-03-28T08:44:42Z
Revision history for this page on the wiki
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Greghansen: Blanked the page
2012-09-25T00:15:54Z
<p>Blanked the page</p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><h1>June</h1></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/23">Week 23</a> • </del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/25">Week 25</a> • </del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/26">Week 26</a></del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><h1> Week 25: June 18<span class="exposant">th</span> to 24<span class="exposant">th</span> </h1></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></br></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><b> Goal </b></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></br></del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><li>Design of the wiki</li></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><li>Set a deterministic model with X,Y and Z in order to see if the circuit designed by the biologists could work</li></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><li>Research of parameters</li></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><li>Learn about Stochastic modeling and the Gillespie Algorithm (Reading of the article <u>Stochastic Simulation of Chemical Kinetics</u> from Daniel T. Gillespie)</li></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></ul></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></br></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><b> Completion </b></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></br></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><ul></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">A first essay of a possible design for the wiki has been made. The ODEs for the deterministic system are set but they depend on parameters. The graphs of that model seem to meet our expectations.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></br></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">The research of some parameters has been made in the previous iGEM’s wikis (degradation rate of arabinose & transcription/translation rate of araC found on team PKU beijing 2009’s wiki). Otherwise, a first stochastic model of the new circuit including cya & the enzymatic reaction has been set. The output is actually amplified but not as much as required. We are wondering if the inefficiency is due to a modeling problem or the structure of the biological system.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Finally, the article has been read and studied.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></ul></del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">{{:Team:Grenoble/script}}</del></div></td><td colspan="2"> </td></tr>
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Greghansen
http://2012.igem.org/wiki/index.php?title=Team:Grenoble/Modeling/Notebook/June/25&diff=94877&oldid=prev
JulieH at 13:56, 4 September 2012
2012-09-04T13:56:36Z
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<td colspan='2' style="background-color: white; color:black;">Revision as of 13:56, 4 September 2012</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><b> Completion </b></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><b> Completion </b></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></br></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><ul></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">A first essay of a possible design for the wiki has been made. The ODEs for the deterministic system are set but they depend on parameters. The graphs of that model seem to meet our expectations.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">The research of some parameters has been made in the previous iGEM’s wikis (degradation rate of arabinose & transcription/translation rate of araC found on team PKU beijing 2009’s wiki). Otherwise, a first stochastic model of the new circuit including cya & the enzymatic reaction has been set. The output is actually amplified but not as much as required. We are wondering if the inefficiency is due to a modeling problem or the structure of the biological system.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Finally, the article has been read and studied.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ul></ins></div></td></tr>
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JulieH
http://2012.igem.org/wiki/index.php?title=Team:Grenoble/Modeling/Notebook/June/25&diff=94847&oldid=prev
JulieH at 13:42, 4 September 2012
2012-09-04T13:42:39Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><b> Goal </b></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><b> Goal </b></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><ul></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><li>Design of the wiki</li></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><li>Set a deterministic model with X,Y and Z in order to see if the circuit designed by the biologists could work</li></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><li>Research of parameters</li></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><li>Learn about Stochastic modeling and the Gillespie Algorithm (Reading of the article <u>Stochastic Simulation of Chemical Kinetics</u> from Daniel T. Gillespie)</li></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ul></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><b> Completion </b></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><b> Completion </b></div></td></tr>
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JulieH
http://2012.igem.org/wiki/index.php?title=Team:Grenoble/Modeling/Notebook/June/25&diff=86219&oldid=prev
JulieH at 10:56, 29 August 2012
2012-08-29T10:56:29Z
<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h1> Week 25: June 18<span class="exposant">th</span> to 24<span class="exposant">th</span> </h1></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><h1> Week 25: June 18<span class="exposant">th</span> to 24<span class="exposant">th</span> </h1></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><b> Goal </b></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"></br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"></br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><b> Completion </b></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"></br></ins></div></td></tr>
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JulieH
http://2012.igem.org/wiki/index.php?title=Team:Grenoble/Modeling/Notebook/June/25&diff=86107&oldid=prev
JulieH: Created page with "{{:Team:Grenoble/Templates/Modeling}} <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <body id="Modeling"> <div id="cadre"> <section> <h1>June</h1> <a href="..."
2012-08-29T09:41:54Z
<p>Created page with "{{:Team:Grenoble/Templates/Modeling}} <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> <body id="Modeling"> <div id="cadre"> <section> <h1>June</h1> <a href="..."</p>
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<h1>June</h1><br />
<a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/23">Week 23</a> • <br />
<a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/24">Week 24</a> • <br />
<a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/25">Week 25</a> • <br />
<a href="https://2012.igem.org/Team:Grenoble/Modeling/Notebook/June/26">Week 26</a><br />
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<h1> Week 25: June 18<span class="exposant">th</span> to 24<span class="exposant">th</span> </h1><br />
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JulieH