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Team:Grenoble/Biology/Network
From 2012.igem.org
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| - | Once the dipeptide is bound to the Tap part <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[7]</a>, the EnvZ part allows the phosphorylation of OmpR <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[8]</a>, a transcriptional activator. | + | Once the dipeptide is bound to the Tap part <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[7]</a>, the EnvZ part allows the phosphorylation of OmpR <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[8]</a> <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[9]</a>, a transcriptional activator which is constitutively produced. |
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| - | Once OmpR is phosphorylated, it allows the production of adenyl cyclase by activating the OmpC promoter <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[ | + | Once OmpR is phosphorylated, it allows the production of adenyl cyclase by activating the OmpC promoter <a href="https://2012.igem.org/Team:Grenoble/Biology/Network#30">[10]</a>.<br/> |
Adenyl cyclase is an enzyme which catalyse the conversion of ATP (Adenosine Tri-Phosphate) to cAMP (cyclic Adenosine Mono-Phosphate).<br/> | Adenyl cyclase is an enzyme which catalyse the conversion of ATP (Adenosine Tri-Phosphate) to cAMP (cyclic Adenosine Mono-Phosphate).<br/> | ||
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<li><b>[8]</b> Sheng Jian Cai, Masayori Inouye. (2002). EnvZ-OmpR Interaction and Osmoregulation in <i>Escherichia coli</i>. <i>The Journal of Biological Chemistry</i>. Vol. 277, No. 27, p.24155-24161.</li> | <li><b>[8]</b> Sheng Jian Cai, Masayori Inouye. (2002). EnvZ-OmpR Interaction and Osmoregulation in <i>Escherichia coli</i>. <i>The Journal of Biological Chemistry</i>. Vol. 277, No. 27, p.24155-24161.</li> | ||
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| - | <li><b>[9]</b> Sumio Maeda, Katsuhiko Takayanagi, Yoshifumi Nishimura, Takemi Maruyama, Kou Sato, and Takeshi Mizuno. (1991). Activation of the Osmoregulated <i>ompC</i> Gene by the OmpR Protein in <i>Escherichia coli</i>: A Study Involving Synthetic OmpR-Binding Sequences. <i>Journal of Biochemistry</i>. 110, 324-327.</li> | + | <li><b>[9]</b> <a href="http://ecoliwiki.net/colipedia/index.php/ompR:Expression">ompR expression</a></li> |
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| + | <li><b>[10]</b> Sumio Maeda, Katsuhiko Takayanagi, Yoshifumi Nishimura, Takemi Maruyama, Kou Sato, and Takeshi Mizuno. (1991). Activation of the Osmoregulated <i>ompC</i> Gene by the OmpR Protein in <i>Escherichia coli</i>: A Study Involving Synthetic OmpR-Binding Sequences. <i>Journal of Biochemistry</i>. 110, 324-327.</li> | ||
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Revision as of 22:28, 24 September 2012
Network details
Our system is divided in two modules:- signaling module
- amplification module
Signaling module
The signaling module allows our bacterial strain to integrate the input signal = the pathogene presence.This is also one of our module of modeling.
The idea of this module is du to the iGEM London Imperial College 2010 Team work on Parasight [1].
Staphylococcus aureus secretes an enzyme, exfoliative toxin B [2] which cut a specific amino-acids sequence (Desmoglein 1). This specific sequence can be used as a linker between a membrane protein and a dipeptide.
Once S. aureus is present, the linker is cut by the protease and the dipeptide is released.
The dipeptide binds to his receptor which is an engineered [3] [4] receptor:
- the extracellular part is the extracellular part of Tap [5], a dipeptide receptor involved in the chemotaxism
- the intracellular part is the intracellular part of EnvZ [6], a histidine kinase involved in the osmoregulation
Once the dipeptide is bound to the Tap part [7], the EnvZ part allows the phosphorylation of OmpR [8] [9], a transcriptional activator which is constitutively produced.
Amplification module
The amplification module allows our bacterial strain to amplify the input signal and to produce an output signal = fluorescence.This is also one of our module of modeling.
Internal amplification
Once OmpR is phosphorylated, it allows the production of adenyl cyclase by activating the OmpC promoter [10].
Adenyl cyclase is an enzyme which catalyse the conversion of ATP (Adenosine Tri-Phosphate) to cAMP (cyclic Adenosine Mono-Phosphate).
cAMP binds to CRP (C-reactive protein) and then this complex allows the production of AraC by activating the pMalT promoter.
In the presence of arabinose, AraC, with cAMP-CRP, activates the pAraBAD promoter, forming thus an "AND" gate, which allow the production of:
- adenyl cyclase which reproduce cAMP, forming thus an amplification loop
- GFP (Green Fluorescent Protein) = our output signal
External amplification
When one bacterium detecte S. aureus, it produces a lot of GFP and cAMP. cAMP can diffuse through the membrane and activates the amplification loop in all the neighbourings bacteria which can thus produce a lot of GFP and cAMP.The result is an entire population which produce GFP whereas only one bacterium has detected the pathogen in the first place:
References
- [1] https://2010.igem.org/Team:Imperial_College_London/Modules/Detection
- [2] Masayuki Amagi, Takayuki Yamaguchi, Yasushi Hanakawa, Koji Nishifuji, Motoyuki Sugai, John R. Stanley. Staphylococcal Exfoliative Toxin B Specifically Cleaves Desmoglein 1. (2002). The Journal of Investigative Dermatology. Vol. 118, No. 5.
- [3] J W Baumgartner, C Kim, R E Brissette, M Inouye, C Park, G L Hazelbauer. (1994). Transmembrane signalling by a hybrid protein: communication from the domain of chemoreceptor Trg that recognizes sugar-binding proteins to the kinase/phosphatase domain of osmosensors EnvZ. Journal of Bacteriology. Vol. 176, No. 4.
- [4] Siromi Weerasuriya, Brian M. Schneider, Michael D. Manson. (1998). Chimeric Chemoreceptors in Escherichia coli: Signaling properties of Tar-Tap and Tap-Tar Hybrids. Journal of Bacteriology. Vol. 180, No. 4, p. 914-920.
- [5] Polypeptide: Tap
- [6] Protein: EnvZ sensory histidine kinase
- [7] Michael D. Manson, Volker Blank, Gabriele Brade. (1986). Peptide chemotaxis in E. coli involves the Tap signal transducer and the dipeptide permease. Nature. Vol. 321.
- [8] Sheng Jian Cai, Masayori Inouye. (2002). EnvZ-OmpR Interaction and Osmoregulation in Escherichia coli. The Journal of Biological Chemistry. Vol. 277, No. 27, p.24155-24161.
- [9] ompR expression
- [10] Sumio Maeda, Katsuhiko Takayanagi, Yoshifumi Nishimura, Takemi Maruyama, Kou Sato, and Takeshi Mizuno. (1991). Activation of the Osmoregulated ompC Gene by the OmpR Protein in Escherichia coli: A Study Involving Synthetic OmpR-Binding Sequences. Journal of Biochemistry. 110, 324-327.
