Team:Exeter/lab book/gibs/wk4
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+ | <a href="https://2012.igem.org/Team:Exeter/lab_book/proto"; style="color:#57b947">Protocols</a> | ||
+ | | | ||
<a href="https://2012.igem.org/Team:Exeter/lab_book/1gp/wk1"; style="color:#57b947">Single Gene Plasmids and Enzyme Characterisation</a> | <a href="https://2012.igem.org/Team:Exeter/lab_book/1gp/wk1"; style="color:#57b947">Single Gene Plasmids and Enzyme Characterisation</a> | ||
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- | <a href="https://2012.igem.org/Team:Exeter/ | + | <a href="https://2012.igem.org/Team:Exeter/Results#usepoly"; style="color:#e30614" target="_blank"><font size="3"><b>Results: Part 1</b></font></a> |
<p> | <p> | ||
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</p> | </p> | ||
- | <a href="https://2012.igem.org/Team:Exeter/ | + | <a href="https://2012.igem.org/Team:Exeter/Results/GvsB"; style="color:#e30614" target="_blank"><font size="3"><b>Results: Part 2</b></font></a> |
</font> | </font> | ||
</div> | </div> | ||
<!--End Project Division Week Hyperlinks--> | <!--End Project Division Week Hyperlinks--> | ||
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<td width="850" height="250"> | <td width="850" height="250"> | ||
<!------------INSERT WEEKLY IMAGE HERE------------> | <!------------INSERT WEEKLY IMAGE HERE------------> | ||
- | <img src="" alt="" title="" width="850" height="250"> | + | <img src="https://static.igem.org/mediawiki/2012/1/17/Exe2012pipetting.JPG" alt="" title="" width="850" height="250"> |
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<div style="text-align:justify"> | <div style="text-align:justify"> | ||
- | <font face=" | + | <font face="Verdana" color="#1d1d1b" size="2"> |
- | <font face=" | + | <font face="Verdana" color="#57b947" size="4"> |
<p><b><u>Operon Construction: 30th July - 3rd August 2012</u></b></p> | <p><b><u>Operon Construction: 30th July - 3rd August 2012</u></b></p> | ||
</font> | </font> | ||
- | <!<p><b>**Monday 30.7.12**</b></p><br><p> | + | <!<p><b>**Monday 30.7.12**</b></p><br> |
- | <b>4 pm</b></p><p> | + | <p><b>4 pm</b></p> |
- | Inoculated LB(kan) broth with transformed | + | <p>Inoculated LB(kan) broth with transformed pBAD large (BBa_I0500) colonies <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/2" style="color:#57b947"><u>according to protocol</u></a></p><br> |
- | <b>**Tuesday 31.7.12**</b></p> | + | <p><b>**Tuesday 31.7.12**</b></p> |
- | <b>9 am</b> | + | <p><b>9 am</b></p><br> |
- | + | ||
- | + | ||
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- | + | <p>Centrifuged broth tubes for 5 minutes, 3901 rcf, 4 °C</p> | |
+ | <p>Supernatant discarded</p> | ||
+ | <p> <a href="http://www.fermentas.com/templates/files/tiny_mce/coa_pdf/coa_k0502.pdf" style="color:#57B947" target="_blank"><u>Miniprep</u></a> of pBAD (BBa_I0500)</p> | ||
+ | <p><b><i>Step 4</i></b> changed to 9 minutes</p><p> | ||
+ | <p><b><i>Step 10</i></b>20µl milli-Q water added in place of elution buffer, followed by another 10 µl after incubation and centrifugation</p><br> | ||
- | < | + | <p><a href="https://2012.igem.org/Team:Exeter/lab_book/proto/4" style="color:#57b947"><u>3A BioBrick Assembly</u></a> for pBAD-RBS (BBa_I0500 + BBa_B0034)</p><br> |
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- | < | + | <p><u>Digestion:</u></p><br> |
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- | < | + | <p><u>Upstream</u></p> |
- | + | <p>pBAD (BBa_I0500) plasmid DNA: 8.68 µl</p> | |
- | + | <p>MilliQ water: 18 µl</p><br> | |
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- | + | <p><u>Downstream</u></p> | |
+ | <p>RBS (BBa_B0034) plasmid DNA: 2.94 µl</p> | ||
+ | <p>MilliQ water: 14.56</p><br> | ||
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- | < | + | <p>Destination plasmid (pSB1K3 – kanamycin resistance) digested according to <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/10" style="color:#57b947"><u> protocol for linearised backbone</u></a></p> |
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- | + | <p>Digested at 37 °C for 1 hour</p> | |
- | Heat inactivated at 80 °C for 20 minutes</p><br | + | <p>Heat inactivated at 80 °C for 20 minutes</p><br> |
- | < | + | <p> Ligation according to same <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/10" style="color:#57b947"><u>protocol</u></a></p> |
- | + | <p>Downstream digest: 2 µl</p> | |
- | + | <p>Plasmid digest: 2 µl</p> | |
+ | <p>Water: 2.5 µl</p><br> | ||
- | < | + | <p>Incubated at room temperature for 1.5 hours</p> |
- | + | <p>Heat inactivated at 80 °C for 20 minutes</p><br> | |
- | + | ||
- | <b> | + | <p><b>2pm</b></p> |
+ | <p>Sent DNA off for sequencing with VF2 and VR primers – pBAD (BBa_I0500) according to Bioline instructions</p><br> | ||
- | <b> | + | <p><b>3 pm</b></p> |
- | + | <p>pBAD-RBS construct <a href="https://2012.igem.org/Team:Exeter/lab_book/proto/1" style="color:#57b947"><u>transformed</u></a></p> | |
- | + | <p>2 µl of construct DNA added to competent cells | |
- | + | <p>Plated volumes were 50 µl and 150 µl on LB(kan) </p><br> | |
- | < | + | |
- | < | + | |
- | <b>2. | + | <p><b>**Thursday 2.8.12**</b></p> |
- | + | <p><b>9 am</b></p><br> | |
- | < | + | <p>Broth tubes centrifuged for 5 minutes, 3901 rcf, 4 °C</p> |
- | + | <p>Supernatant discarded</p> | |
- | + | <p><a href="http://www.fermentas.com/templates/files/tiny_mce/coa_pdf/coa_k0502.pdf" style="color:#57B947" target="_blank"><u>Miniprep</u></a> of pBAD-RBS (BBa_I0500 + BBa_B0034)</p> | |
- | + | <p><b><i>Step 10</i></b>45µl milli-Q water added in place of elution buffer, followed by another 5 µl after incubation and centrifugation</p> | |
- | + | ||
- | + | ||
- | Incubated at 37 °C for 20 minutes</p><p> | + | <p><b>2.30 pm</b></p> |
- | Run on gel</p><br><p> | + | <p>Gel of pPAD large-RBS (BBa_I0500 + BBa_B0034)</p><br> |
+ | |||
+ | <p><u>Digest for gel (using only one enzyme – nanodrop data was uncertain) </u></p> | ||
+ | <p>DNA (assumed ~100ng/µl): 5 µl</p> | ||
+ | <p>EcoRI-HF: 1µl</p> | ||
+ | <p>100X BSA: 0.5 µl</p> | ||
+ | <p>10X NEBuffer 2: 5 µl</p> | ||
+ | <p>Water: 11 µl</p><br> | ||
+ | |||
+ | <p>Incubated at 37 °C for 20 minutes</p> | ||
+ | <p>Run on 1% agarose gel</p><br> | ||
+ | |||
+ | <p>LB(amp) streak plates made for pBAD-RBS (BBa_I0500 + BBa_B0034) dregs from miniprep. </p><br> | ||
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+ | <table width="980" align="center" cellspacing="20"> | ||
+ | <tr align="center"> | ||
+ | <td> | ||
+ | <font color="#57B947" size="1" face="Verdana"> | ||
+ | <p><u>Website Designed and Built by: Ryan Edginton, James Lynch & Alex Clowsley</u> | | ||
+ | <a href="https://igem.org/Team.cgi?id=764" style="color:#57B947" target="_blank"><u>Contact Us</u></a> | | ||
+ | <a href="https://2012.igem.org/Team:Exeter/site_map" style="color:#57B947"><u>Site Map</u></a></p> | ||
+ | </font> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
</body> | </body> | ||
</html> | </html> |
Latest revision as of 00:09, 27 September 2012
Operon Construction: 30th July - 3rd August 2012 **Monday 30.7.12**4 pm Inoculated LB(kan) broth with transformed pBAD large (BBa_I0500) colonies according to protocol **Tuesday 31.7.12** 9 am Centrifuged broth tubes for 5 minutes, 3901 rcf, 4 °C Supernatant discarded Miniprep of pBAD (BBa_I0500) Step 4 changed to 9 minutes
Step 1020µl milli-Q water added in place of elution buffer, followed by another 10 µl after incubation and centrifugation 3A BioBrick Assembly for pBAD-RBS (BBa_I0500 + BBa_B0034) Digestion: Upstream pBAD (BBa_I0500) plasmid DNA: 8.68 µl MilliQ water: 18 µl Downstream RBS (BBa_B0034) plasmid DNA: 2.94 µl MilliQ water: 14.56 Destination plasmid (pSB1K3 – kanamycin resistance) digested according to protocol for linearised backbone Digested at 37 °C for 1 hour Heat inactivated at 80 °C for 20 minutes Ligation according to same protocol Downstream digest: 2 µl Plasmid digest: 2 µl Water: 2.5 µl Incubated at room temperature for 1.5 hours Heat inactivated at 80 °C for 20 minutes 2pm Sent DNA off for sequencing with VF2 and VR primers – pBAD (BBa_I0500) according to Bioline instructions 3 pm pBAD-RBS construct transformed 2 µl of construct DNA added to competent cells Plated volumes were 50 µl and 150 µl on LB(kan) **Thursday 2.8.12** 9 am Broth tubes centrifuged for 5 minutes, 3901 rcf, 4 °C Supernatant discarded Miniprep of pBAD-RBS (BBa_I0500 + BBa_B0034) Step 1045µl milli-Q water added in place of elution buffer, followed by another 5 µl after incubation and centrifugation 2.30 pm Gel of pPAD large-RBS (BBa_I0500 + BBa_B0034) Digest for gel (using only one enzyme – nanodrop data was uncertain) DNA (assumed ~100ng/µl): 5 µl EcoRI-HF: 1µl 100X BSA: 0.5 µl 10X NEBuffer 2: 5 µl Water: 11 µl Incubated at 37 °C for 20 minutes Run on 1% agarose gel LB(amp) streak plates made for pBAD-RBS (BBa_I0500 + BBa_B0034) dregs from miniprep. |
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