Team:Evry/AIDSystem

From 2012.igem.org

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<h3>Skin-Kidney communicatio</h3>
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<h2>Skin-Kidney communication</h3>
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<p>We had to choose 2 organs we would like to make communicate. The choice of these organs has been set on the specific properties of the tissues in term of function and blod irrigation as well as on the existance of reported functionnig tissue specific promotors. As an emitter, we choosed to use the skin, and as a receiver, the kidney. We are going to described the reason of these choices now.</p>
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<p>The choice of tissues has been set on the specific properties of the tissues in term of function and blod irrigation as well as on the existance of reported functionnig tissue specific promotors. As an emitter, we choosed to use the skin, and as a receiver, the kidney.</p>
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<img src="http://2012.igem.org/wiki/images/2/2d/General_hormonal_schematic.png" width="600px" alt="Skin-Kidney" />
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<p>In orted to trigger the emission of the hormone in our synthetic hormonal system we wanted to dissolve a chemical in the water of the tadpole that would activate an indicible promoter. The most exposed tissue to the chemical environment is undoubtely the epithelium, because of the important surface exposed to the water. On the top of it, this tissue is highly vascularized, which is important in order to acheive a high concentration of auxin in the blood. An important library of promoter has also been identified for this tissue.</p>
<p>In orted to trigger the emission of the hormone in our synthetic hormonal system we wanted to dissolve a chemical in the water of the tadpole that would activate an indicible promoter. The most exposed tissue to the chemical environment is undoubtely the epithelium, because of the important surface exposed to the water. On the top of it, this tissue is highly vascularized, which is important in order to acheive a high concentration of auxin in the blood. An important library of promoter has also been identified for this tissue.</p>
<p>The problem of introducing a non native hormon into the blood is that the kidney is likely to eliminate it from the blood. The kidney works as an inverted filter, in the sense that it takes out every molecule from the blood and reintroduce only the one it knows, and our hormon does not nessarily belongs to these molecule. Therefore, we can anticipate that the course of your molecule will ends up there and it will be the place where it is the most concentrated. This organ seems to be the best place for expressing our receiver system. There are also good promoters coming from the different ion channels that are know to work there.</p>
<p>The problem of introducing a non native hormon into the blood is that the kidney is likely to eliminate it from the blood. The kidney works as an inverted filter, in the sense that it takes out every molecule from the blood and reintroduce only the one it knows, and our hormon does not nessarily belongs to these molecule. Therefore, we can anticipate that the course of your molecule will ends up there and it will be the place where it is the most concentrated. This organ seems to be the best place for expressing our receiver system. There are also good promoters coming from the different ion channels that are know to work there.</p>
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<h3>Conclusion</h3>
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<h2>Conclusion</h2>
<p>The implementation of a tissue communication underlines the interest for the use of eucaryotes such as <i>Xenopus</i> in synthetic biology. This tool could be used with any protein fused with AID signal, allowing to test it in a multitissular system.</p>
<p>The implementation of a tissue communication underlines the interest for the use of eucaryotes such as <i>Xenopus</i> in synthetic biology. This tool could be used with any protein fused with AID signal, allowing to test it in a multitissular system.</p>
<p>Our orthogonal hormonal system was tested in pCS2+ plasmid. We have imagined to insert I-Sce sites in this plasmid to ensure its integration in the chromosome. So far, creating a durable tissue communication system.</p>
<p>Our orthogonal hormonal system was tested in pCS2+ plasmid. We have imagined to insert I-Sce sites in this plasmid to ensure its integration in the chromosome. So far, creating a durable tissue communication system.</p>

Revision as of 14:55, 26 September 2012

Intertissue communication: An orthogonal hormonal system

We adapted the auxin production device from the iGEM team Imperial college 2011 to eukaryotes and combined it with an auxin detection module. This way, we created the first synthetic hormonal system for inter-tissues communication.

To test this system, we co-injected plasmids expressing our production and reception devices in embryos, a new chassis we wanted to implement for synthetic biology. We performed auxin toxicity and uptake tests at the begining of our project to ensure the feasability.

Auxin production devices

We designed three auxin production devices in embryos. The devices 1 and 2 were designed to be expressed in embryos, while device 3 was designed to be expressed in E. coli. In this last case, the aim is that the tadpoles eat bacteria expressing device 3.

3 devices for production
  • Auxin production device 1 : this device is composed of BBa_K812021, coding for IaaM, and BBa_K812120, coding for IaaH for auxin generator for the use in embryos.
  • Auxin production device 2 : this device is composed of BBa_K812014. It is meant for the co-expression of IaaH and IaaM genes in the same cells in embryos.
  • Auxin production device 3 : this device is composed of BBa_K515100, coding for IaaM and IaaH for auxin generator in E.coli.
Production devices

Pathway

Auxin pathway

Auxin reception devices

Our reception system is based on the auxin-degron system established by K. Nishimura and all. (2009). This system allows a rapid depletion of protein in nonplant cells.

We designed two auxin production devices in embryos. To visualize the communication between different tissues or between E. coli and a tissue of the embryo, we chose to work with GFP. Our orthogonal hormonal system works with any proteins fused to AID signal with any transcription factors.

  • Auxin reception device 1 : this device is composed of BBa_K812010 coding for GFP-AID, and BBa_K812012 coding for OsTir1.
  • Auxin reception device 2 : this device is composed of BBa_K812013 coding for GFP-AID and OsTir1 in the same cell.

devices for reception

Auxin degron system

Auxin binds osTir1 and promotes the interraction of E3 ubiquitin which recruits E2. This mechanism allows the polyubiquitination and the adressage of the protein to the proteasome.

To ensure this system, we checked that Xenopus tropicalis possesses the Skp1, Cul1 and Rbx1 genes.

devices for reception

Skin-Kidney communication

The choice of tissues has been set on the specific properties of the tissues in term of function and blod irrigation as well as on the existance of reported functionnig tissue specific promotors. As an emitter, we choosed to use the skin, and as a receiver, the kidney.

Skin-Kidney

In orted to trigger the emission of the hormone in our synthetic hormonal system we wanted to dissolve a chemical in the water of the tadpole that would activate an indicible promoter. The most exposed tissue to the chemical environment is undoubtely the epithelium, because of the important surface exposed to the water. On the top of it, this tissue is highly vascularized, which is important in order to acheive a high concentration of auxin in the blood. An important library of promoter has also been identified for this tissue.

The problem of introducing a non native hormon into the blood is that the kidney is likely to eliminate it from the blood. The kidney works as an inverted filter, in the sense that it takes out every molecule from the blood and reintroduce only the one it knows, and our hormon does not nessarily belongs to these molecule. Therefore, we can anticipate that the course of your molecule will ends up there and it will be the place where it is the most concentrated. This organ seems to be the best place for expressing our receiver system. There are also good promoters coming from the different ion channels that are know to work there.

Conclusion

The implementation of a tissue communication underlines the interest for the use of eucaryotes such as Xenopus in synthetic biology. This tool could be used with any protein fused with AID signal, allowing to test it in a multitissular system.

Our orthogonal hormonal system was tested in pCS2+ plasmid. We have imagined to insert I-Sce sites in this plasmid to ensure its integration in the chromosome. So far, creating a durable tissue communication system.

References:

  1. 1. Nishimura, K., Fukagawa, T., Takisawa, H., Kakimoto, T. & Kanemaki, M. An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nature methods 6, 917-22 (2009).