Team:Calgary/Project/OSCAR/CatecholDegradation

From 2012.igem.org

(Difference between revisions)
Line 20: Line 20:
-
</html>[[File:UCalgary2010_R0040-XylE.png|500px|thumb|Reaction of Catechol 2,3-dioxygenase with catechol to form 2-Hydroxymuconic semialdehyde.|center]]<html>
+
</html>[[File:UCalgary2012_Catechol_to_2-HMS.PNG|500px|thumb|Reaction of Catechol 2,3-dioxygenase with catechol to form 2-Hydroxymuconic semialdehyde.|center]]<html>
 +
 
 +
File:UCalgary2012_Catechol_to_2-HMS.PNG
</html>}}
</html>}}

Revision as of 01:13, 25 September 2012

Hello! iGEM Calgary's wiki functions best with Javascript enabled, especially for mobile devices. We recommend that you enable Javascript on your device for the best wiki-viewing experience. Thanks!

Catechol Degradation

Catechol, a by-product of poly aromatic hydrocarbon metabolism, is a toxic compound found in tailings ponds. This toxic compound can be degraded by Catechol 2,3-dioxygenase, which is coded for by the gene XylE found on the Tol plasmid of Pseudomonas putida (Nakai). Previously there were only two available biobricks of this gene. One contained the XylE gene with its native RBS site and the other part had an added Pcst promoter, which was glucose-repressible. To tackle to problem of XylE being repressed, when the transformed E.coli was grown in media containing glucose, a TetR promoter was added to the part containing only the gene.

UCalgary2010 R0040-XylE.png

Catechol 2,3-dioxygenase is an extradiol dioxygenase which cleaves catechol adjacent to the two hydroxyl groups. When this occurs 2-hydroxymuconic semialdehyde is produced, which is yellow in colour. This colour change allows for easy assays to be conducted which show the enzymes activity.

The colour change assays were performed with the newly constructed part by bringing the supernatant of an overnight culture to a concentration of 0.1 M of catechol. The catechol was added to the supernatant because the reaction takes place outside of the cell. Within minutes of the addition of catechol to the supernatant, the solution turned from the pale yellow of LB to a bright yellow. This assay was completed by following the previous assay done by the 2008 Edinburgh iGEM team.

References

Nakai, C., Kagamiyama, H., and Nozaki, M. 1983. Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida. The Journal of Biological Chemistry 258: 2923-2928.

|500px|thumb|Reaction of Catechol 2,3-dioxygenase with catechol to form 2-Hydroxymuconic semialdehyde.|center
Reaction of Catechol 2,3-dioxygenase with catechol to form 2-Hydroxymuconic semialdehyde.
File:UCalgary2012_Catechol_to_2-HMS.PNG