Team:CBNU-Korea/Notebook

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<li class="PROJECT"><a
<li class="PROJECT"><a
href="https://2012.igem.org/Team:CBNU-Korea/Project">PROJECT</a></li>
href="https://2012.igem.org/Team:CBNU-Korea/Project">PROJECT</a></li>
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<li class="NOTEBOOK"><a
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<li class="NOTEBOOK"><a href="#">NOTEBOOK</a></li>
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<ul>
<ul>
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<li class="SAFETY"><a href="https://2012.igem.org/Team:CBNU-Korea/Safety">SAFETY</a></li>
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href="https://2012.igem.org/Team:CBNU-Korea/Safety">SAFETY</a></li>
<li class="JUDGING"><a
<li class="JUDGING"><a
href="https://2012.igem.org/Team:CBNU-Korea/JG/judging">JUDGING</a></li>
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<div id="CB_sub_menu">
<div id="CB_sub_menu">
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<ul>
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<div id="CB_sub_mobile_menu">+ MENU</div>
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<ul class="CB_ul">
<li class="li_NoteBook"><a href="#">01 + NoteBook</a></li>
<li class="li_NoteBook"><a href="#">01 + NoteBook</a></li>
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<li id="li_sub" class="MA"><a href="#">- March, April</a></li>
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<li id="li_sub" class="MJ"><a href="https://2012.igem.org/Team:CBNU-Korea/Notebook/2">- May, June</a></li>
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<li id="li_sub" class="July"><a href="https://2012.igem.org/Team:CBNU-Korea/Notebook/3">- July</a></li>
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<li id="li_sub" class="August"><a href="https://2012.igem.org/Team:CBNU-Korea/Notebook/4">- August</a></li>
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<li id="li_sub" class="September"><a href="https://2012.igem.org/Team:CBNU-Korea/Notebook/5">- September</a></li>
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<h1>Safety</h1>
 
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<h2>
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<h1>March - April</h1>
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1. Would any of your project ideas raise safety issues in terms
+
-
of:<br> - researcher safety,<br>
+
-
</h2>
+
-
<p>During the time preparing for the Jamboree, health was the
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<h2>March. 26th – April. 1th</h2>
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most important thing for us. In order to consider the health, we
+
-
decided to study free except the time for conference or develop.
+
-
Especially, we had started the project on the beginning of march,
+
-
so the preparing time didn't pressured us.</p>
+
-
<h2>
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<p>
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- public safety, or<br> - environmental safety?
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<strong>Tuesday</strong>
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</h2>
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</p>
 +
<p>
 +
■CBNU-KOREA team is organized<br> ■Had first meeting<br>
 +
■Introduced about iGem & previous project of CBNU-KOREA
 +
</p>
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<p>We do not exert a bad influence upon environment.</p>
+
<p>
 +
<strong>Thursday</strong>
 +
</p>
 +
<p>
 +
■Planned plan of near future<br> ■(Start -> Find similar gene
 +
comparing sequence by BLAST in 15 species(DEG) -> Certify between
 +
ssential genes and result of BLAST -> Certify if it is equal or
 +
over than 80% -> If it is, adjust to 1500 species.)<br>
 +
■Department of Computer engineering : Planned to study for the
 +
possibilities of the automation of BLAST.<br> ■Department of
 +
Statistics: Planned to calculate probability to be match between
 +
BLAST results and experimently presumed essential genes.<br>
 +
■Department of Microbiology: Planned to study for the database of
 +
NCBI(Variable of NC file).
 +
</p>
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<h2>
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<p>
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2. Do any of the new BioBrick parts (or devices) that you made
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<strong>Friday</strong>
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this year raise any safety issues? If yes,<br> - did you
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</p>
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document these issues in the Registry?<br> - how did you
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<p>
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manage to handle the safety issue?<br> - How could other
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■Re-defined the name of the project of this year(BIDOB)<br>
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teams learn from your experience?
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■Planned to presume essential brick using NCBI data.
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</h2>
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</p>
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<p>We do not have any connections with safety issue because we
 
-
do not make any new brick. However the unexpected software fault
 
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can be cause a discomfort to user.</p>
 
 +
<h2>Apr. 2nd – Apr. 8th</h2>
 +
<p>
 +
<strong>Tuesday</strong>
 +
</p>
 +
<p>
 +
■Parsed a data of 15 species in NCBI and built DB for a first
 +
time.<br> ■Made a result of analysis and built it to DB.<br>
 +
■Planned to study to have a understandable reliability(%) on our
 +
analysis.
 +
</p>
-
<h2>
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<p>
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3. Is there a local biosafety group, committee, or review board at
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<strong>Thursday</strong>
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your institution?<br> - If yes, what does your local
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</p>
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biosafety group think about your project?<br> - If no, which
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<p>Build DB of NCBI information.</p>
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specific biosafety rules or guidelines do you have to consider in
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-
your country?
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</h2>
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<p>
<p>
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<strong>Yes</strong><br>There is the Safety Management System
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<strong>Friday</strong>
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is in our university. It contains 19 stipulations for
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</p>
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experimentation. However we haven't being managed by the system
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<p>
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because our project does not have a laboratory. (<a
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■Presumption of Essential Gene : Grouped more than two species and
-
href="http://safe.chungbuk.ac.kr/SafeLaw/Law01" target="_blank">http://safe.chungbuk.ac.kr/SafeLaw/Law01</a>)
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analyzed characteristic of each genome. Studied a EGGS Site.<br>
 +
■Analysis of location, direction and array of essential gene :
 +
Studied for organization analysis of statistic-biology. Studied
 +
some of research paper.<br> ■Implementing viewer : Planned to
 +
study for JAVA computer language.
</p>
</p>
 +
<p>
 +
<strong>Saturday</strong>
 +
</p>
 +
<p>
 +
■Presumption of Essential Gene : Find species-EG by analyzing in
 +
each species.<br> ■Presumption of Essential Gene : Find
 +
Essential gene by analyzing result between species.<br>
 +
■Presumption of Essential Function : Analyze function of each
 +
essential genes.<br> ■Analyzing the array of genes : Analyze
 +
location and array of essential genes and every genes.<br>
 +
■Implement Viewer by built DB.
 +
</p>
</div>
</div>

Latest revision as of 03:51, 27 September 2012

NOTEBOOK

- Notebook

March - April

March. 26th – April. 1th

Tuesday

■CBNU-KOREA team is organized
■Had first meeting
■Introduced about iGem & previous project of CBNU-KOREA

Thursday

■Planned plan of near future
■(Start -> Find similar gene comparing sequence by BLAST in 15 species(DEG) -> Certify between ssential genes and result of BLAST -> Certify if it is equal or over than 80% -> If it is, adjust to 1500 species.)
■Department of Computer engineering : Planned to study for the possibilities of the automation of BLAST.
■Department of Statistics: Planned to calculate probability to be match between BLAST results and experimently presumed essential genes.
■Department of Microbiology: Planned to study for the database of NCBI(Variable of NC file).

Friday

■Re-defined the name of the project of this year(BIDOB)
■Planned to presume essential brick using NCBI data.

Apr. 2nd – Apr. 8th

Tuesday

■Parsed a data of 15 species in NCBI and built DB for a first time.
■Made a result of analysis and built it to DB.
■Planned to study to have a understandable reliability(%) on our analysis.

Thursday

Build DB of NCBI information.

Friday

■Presumption of Essential Gene : Grouped more than two species and analyzed characteristic of each genome. Studied a EGGS Site.
■Analysis of location, direction and array of essential gene : Studied for organization analysis of statistic-biology. Studied some of research paper.
■Implementing viewer : Planned to study for JAVA computer language.

Saturday

■Presumption of Essential Gene : Find species-EG by analyzing in each species.
■Presumption of Essential Gene : Find Essential gene by analyzing result between species.
■Presumption of Essential Function : Analyze function of each essential genes.
■Analyzing the array of genes : Analyze location and array of essential genes and every genes.
■Implement Viewer by built DB.

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