Team:Buenos Aires/DataPage

From 2012.igem.org

(Difference between revisions)
(Created page with "{{:Team:Buenos_Aires/Templates/menu}} = Data Page = We built 2 '''His-export devices''', and 2 '''Trp-export devices''': * His-export I (<partinfo>BBa_K792009</partinfo>) * ...")
(Data Page)
 
(One intermediate revision not shown)
Line 4: Line 4:
= Data Page =
= Data Page =
 +
[[File:Crossfeeding-v03-small.png | 700px]]
 +
In order for the cross-feeding scheme to work we need each strain to export the amino acid they produce (either Histidine or Tryptophan). To achieve this we created a devices design to secrete to the medium an His (or Trp) rich peptides.
 +
 +
{| style="width: 100%"
 +
| align="center" | [[File:Crossfeeding-device-design_v01.jpg]]
 +
|-
 +
| align="center" | '''Basic DNA structure of the devices with their constitutive parts'''
 +
|}
 +
 +
 +
* '''Kozak''' consensus sequence for initiation of translation.
 +
* '''Signal peptide''' that targets the product of the gene for secretion.
 +
* '''Trojan peptide''' to increase internalization in target cell.
 +
* '''Payload''': this is the exported amino acid rich domain of the protein.
 +
 +
The input of the devices are ''PoPS'' and the output is secreted amino acids, so the devices are ''PoPS -> exported AA'' transducers. In principle any PoPS generating part can be used.
 +
 +
 +
You can read more about the design process [[Team:Buenos_Aires/Results/Bb1 | here]]
We built 2 '''His-export devices''', and 2 '''Trp-export devices''':
We built 2 '''His-export devices''', and 2 '''Trp-export devices''':

Latest revision as of 03:54, 27 October 2012


Data Page

Crossfeeding-v03-small.png

In order for the cross-feeding scheme to work we need each strain to export the amino acid they produce (either Histidine or Tryptophan). To achieve this we created a devices design to secrete to the medium an His (or Trp) rich peptides.

Crossfeeding-device-design v01.jpg
Basic DNA structure of the devices with their constitutive parts


  • Kozak consensus sequence for initiation of translation.
  • Signal peptide that targets the product of the gene for secretion.
  • Trojan peptide to increase internalization in target cell.
  • Payload: this is the exported amino acid rich domain of the protein.

The input of the devices are PoPS and the output is secreted amino acids, so the devices are PoPS -> exported AA transducers. In principle any PoPS generating part can be used.


You can read more about the design process here

We built 2 His-export devices, and 2 Trp-export devices:

  • His-export I (<partinfo>BBa_K792009</partinfo>)
  • Trp export I (<partinfo>BBa_K792010</partinfo>)
  • His-export II (<partinfo>BBa_K792011</partinfo>)
  • Trp export II (<partinfo>BBa_K792012</partinfo>)


To achive this, we had to create several new basic biobricks:

  • Kozak sequence from yeast α-factor mating pheromone (MFα1) (<partinfo>BBa_K792001</partinfo>)
  • Secretion tag from yeast α-factor mating pheromone (MFα1) (<partinfo>BBa_K792002</partinfo>)
  • HIV TAT penetratin (<partinfo>BBa_K792003</partinfo>)
  • Polyarginine trojan peptide (<partinfo>BBa_K792004</partinfo>)
  • PolyHa, a Histidine rich peptide (His-Tag) (<partinfo>BBa_K792005</partinfo>)
  • TrpZipper2, a Tryptophan rich peptide water soluble and monomeric (<partinfo>BBa_K792006</partinfo>)
  • PolyHb, a stable Histidine rich peptide designed by us (<partinfo>BBa_K792007</partinfo>)
  • PolyWb, a stable Tryptophan rich peptide designed by us(<partinfo>BBa_K792008</partinfo>)