Team:British Columbia/Desulfurization

From 2012.igem.org

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<font face=arial narrow size=5><b>Why the Dsz operon?</b></font></p><font face=arial narrow>
<font face=arial narrow size=5><b>Why the Dsz operon?</b></font></p><font face=arial narrow>
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We choose the Dsz operon for a number of reasons. As stated above, bio-desulfurization has the potential to help relieve serious environmental problem associated with DBT content of fossil fuels. However, the Dsz operon also has a number of advantages directly related to our consortium. First, the pathway has previously been expressed functionally in <i>E. coli</i>, allowing us to obtain a working copy of the pathway expressed in an <i>E. coli</i> monoculture (REF). This will let us directly compare the efficiency of the single cell pathway with our distributed metabolic network. Also, the availability of a working pathway in <i>E. coli</i> indicates that all of the required enzymes will be active when recombinantly expressed in our <i>E. coli</i> consortium strains. Finally, the desulfurization activity of the 4S pathway can be easily monitored and quantitated by HPLC analysis [2].</br></div>
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We choose the Dsz operon for a number of reasons. As stated above, bio-desulfurization has the potential to help relieve serious environmental problem associated with DBT content of fossil fuels. However, the Dsz operon also has a number of advantages directly related to our consortium. First, the pathway has previously been expressed functionally in <i>E. coli</i>, allowing us to obtain a working copy of the pathway expressed in an <i>E. coli</i> monoculture [1]. This will let us directly compare the efficiency of the single cell pathway with our distributed metabolic network. Also, the availability of a working pathway in <i>E. coli</i> indicates that all of the required enzymes will be active when recombinantly expressed in our <i>E. coli</i> consortium strains. Finally, the desulfurization activity of the 4S pathway can be easily monitored and quantitated by HPLC analysis [2].</br></div>
<div id=image><img src="http://2012.igem.org/wiki/images/f/ff/Dsz_Consortium.png" width=500></div>
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<h2>References</h2>
<h2>References</h2>
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'''[1]'''
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<b>[1]</b>      Reichmuth DM <i>et al</i>. Biodesulfurization of Dibenzothiophene in <i>Escherichia coli</i> Is Enhanced by Expression of a <i>Vibrio harveyi</i> Oxidoreductase Gene
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'''[2]'''       Bhatia S and Sharma DK;Thermophilic desulfurization of dibenzothiophene
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<b>[2]</b>       Bhatia S and Sharma DK;Thermophilic desulfurization of dibenzothiophene
and different petroleum oils by Klebsiellasp. 13T, 2011. Environ Sci Pollut Res 19:3491–3497
and different petroleum oils by Klebsiellasp. 13T, 2011. Environ Sci Pollut Res 19:3491–3497

Revision as of 02:04, 4 October 2012

British Columbia - 2012.igem.org


Bio-desulfurization: A Real-world Consortial Case Study

Once we are able to tune our biological consortium it was time to test it on a system of economic relevance: the desulfurization of dibenzothiophene (DBT). DBT is a polyaromatic sulfur compound present in oil crudes whose combustion by oil-powered machines, such as automobiles, causes the release of sulfur dioxide (SO2) into the atmosphere. Sulfur dioxide is a principle source of acid rain and air pollution, and thus the removal of this compound from oil crudes provides benefits to the air quality and general environmental health of developed areas. DBT is highly resistant to hydrodesulfurization, the current process of removing sulphur compounds from crude oil, and thus novel methods of removing this compound are desired. Biodesulfurization of DBT is one means of removing such a compound. Specifically, the 4S pathway from Rhodococcus erythropolis IGTS8, which utilizes the gene products of the Dsz operon, is ideally suited for such a task because it removes DBT from crude oil with minimal impact on the energy density of the crude (i.e. the desirable compounds in the crude that actually serve as fuel, are preserved). As a result of the 4S pathway, DBT is converted to hydroxybiphenyl (HPB, Figure 1).


To create a distributed metabolic network, the three catalytic genes of the Dsz operon were separated into three Escherichia coli strains developed for our tunable consortium. This is crucial to optimizing the metabolic potential of the consortium.




Why the Dsz operon?

We choose the Dsz operon for a number of reasons. As stated above, bio-desulfurization has the potential to help relieve serious environmental problem associated with DBT content of fossil fuels. However, the Dsz operon also has a number of advantages directly related to our consortium. First, the pathway has previously been expressed functionally in E. coli, allowing us to obtain a working copy of the pathway expressed in an E. coli monoculture [1]. This will let us directly compare the efficiency of the single cell pathway with our distributed metabolic network. Also, the availability of a working pathway in E. coli indicates that all of the required enzymes will be active when recombinantly expressed in our E. coli consortium strains. Finally, the desulfurization activity of the 4S pathway can be easily monitored and quantitated by HPLC analysis [2].

References

[1] Reichmuth DM et al. Biodesulfurization of Dibenzothiophene in Escherichia coli Is Enhanced by Expression of a Vibrio harveyi Oxidoreductase Gene [2] Bhatia S and Sharma DK;Thermophilic desulfurization of dibenzothiophene and different petroleum oils by Klebsiellasp. 13T, 2011. Environ Sci Pollut Res 19:3491–3497