Team:Bordeaux

From 2012.igem.org

(Difference between revisions)
 
(20 intermediate revisions not shown)
Line 1: Line 1:
<html>
<html>
 +
<head>
 +
<title>Home - iGEM Bordeaux 2012</title>
 +
<meta charset="utf-8">
 +
<link rel="stylesheet" href="http://cdjemiel.free.fr/igem2012/css/reset.css" type="text/css" media="all">
 +
<link rel="stylesheet" href="http://cdjemiel.free.fr/igem2012/css/hackIgem.css" type="text/css" media="all">
 +
<link rel="stylesheet" href="http://cdjemiel.free.fr/igem2012/css/grid.css" type="text/css" media="all">
 +
<link rel="stylesheet" href="http://cdjemiel.free.fr/igem2012/css/styleIgem.css" type="text/css" media="all">
 +
<link rel="stylesheet" href="http://cdjemiel.free.fr/igem2012/css/jquery-ui-1.8.5.custom.css" type="text/css" media="all">
 +
<script type="text/javascript" src="http://cdjemiel.free.fr/igem2012/js/jquery-1.4.2.min.js" ></script>
 +
<script type="text/javascript" src="http://cdjemiel.free.fr/igem2012/js/jquery.cycle.all.js"></script>
 +
<script type="text/javascript" src="http://cdjemiel.free.fr/igem2012/js/jquery-ui-1.8.5.custom.min.js"></script>
 +
<!--[if lt IE 9]>
 +
<script type="text/javascript" src="js/html5.js"></script>
 +
<![endif]-->
 +
</head>
-
<style type="text/css">
 
-
img[src*="/wiki/skins/common/images/wiki.png"]{
 
-
    width:0;
 
-
    height:98px;
 
-
    padding-right:975px;
 
-
    background-image:url(https://static.igem.org/mediawiki/2012/9/98/Banniere_bdx.png);
 
-
}
 
-
 
-
#p-logo a{
 
-
color:#transparent;
 
-
}
 
-
 
-
 
-
 
-
img {
 
-
    border: none;
 
-
}
 
-
 
-
p { margin:0; padding:0; border:0; outline:0; font-weight:inherit; font-style:inherit; font-size:80%; font-family:inherit; vertical-align:baseline;}
 
-
 
-
caption{ text-align:left; font-weight:normal; }
 
-
 
-
 
-
 
-
/* ---------------------------
 
-
  PAGE ELEMENTS
 
-
------------------------------ */
 
-
 
-
.clear {
 
-
clear:both;
 
-
}
 
-
 
-
/* -----------------------------
 
-
MAIN NAVIGATION        */
 
-
 
-
.nav_container {
 
-
margin:0 auto;
 
-
width: 975px;
 
-
}
 
-
#navMenu{
 
-
display: inline;
 
-
margin: 0;
 
-
padding: 0px;
 
-
position: relative;
 
-
z-index: 6;
 
-
}
 
-
#navMenu li{
 
-
float: left;
 
-
display: inline;
 
-
}
 
-
 
-
#navMenu li.first{
 
-
float: left;
 
-
display: inline;
 
-
background: url("https://static.igem.org/mediawiki/2012/e/ef/Left_nav_bdx.png");
 
-
width:36px;
 
-
height:58px;
 
-
}
 
-
#navMenu li.last{
 
-
float: left;
 
-
display: inline;
 
-
background: url("https://static.igem.org/mediawiki/2012/b/b5/Right_nav_bdx.png");
 
-
width:37px;
 
-
height:58px;
 
-
}
 
-
 
-
 
-
a.navHome, a.navHome_a{
 
-
display:block;
 
-
float:left;
 
-
width:140px;
 
-
height:58px;
 
-
background: url("https://static.igem.org/mediawiki/2012/8/83/Home_bdx.png");
 
-
background-repeat:no-repeat;
 
-
}
 
-
a.navHome:hover{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/8/83/Home_bdx.png") 0 116px;
 
-
}
 
-
a.navHome_a:active{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/8/83/Home_bdx.png") 0 232px;
 
-
background-repeat:no-repeat;
 
-
 
-
}
 
-
 
-
a.navTeam, a.navTeam_a{
 
-
display:block;
 
-
float:left;
 
-
width:140px;
 
-
height:58px;
 
-
background: url("https://static.igem.org/mediawiki/2012/9/96/Team_bdx.png");
 
-
background-repeat:no-repeat;
 
-
}
 
-
a.navTeam:hover{
 
-
background: url("https://static.igem.org/mediawiki/2012/9/96/Team_bdx.png") 0 116px;
 
-
}
 
-
a.navTeam_a:active{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/9/96/Team_bdx.png") 0 232px;
 
-
}
 
-
 
-
a.navProject, a.navProject_a{
 
-
display:block;
 
-
float:left;
 
-
width:140px;
 
-
height:58px;
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png");
 
-
background-repeat:no-repeat;
 
-
}
 
-
a.navProject:hover{
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png") 0 116px;
 
-
}
 
-
a.navProject_a:active{
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png") 0 232px;
 
-
}
 
-
 
-
a.navModelling, a.navModelling_a{
 
-
display:block;
 
-
float:left;
 
-
width:140px;
 
-
height:58px;
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png");
 
-
background-repeat:no-repeat;
 
-
}
 
-
a.navModelling:hover{
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png") 0 116px;
 
-
}
 
-
a.navModelling_a{
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png") 0 58px;
 
-
}
 
-
 
-
a.navBiology, a.navBiology_a{
 
-
display:block;
 
-
float:left;
 
-
width:140px;
 
-
height:58px;
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png");
 
-
background-repeat:no-repeat;
 
-
}
 
-
a.navBiology:hover{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png") 0 116px;
 
-
}
 
-
a.navBiology_a{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/8/86/Project_bdx.png") 0 58px;
 
-
}
 
-
 
-
a.navPartners, a.navPartners_a{
 
-
display:block;
 
-
float:left;
 
-
width:140px;
 
-
height:58px;
 
-
background: url("https://static.igem.org/mediawiki/2012/b/ba/Partners_bdx.png");
 
-
background-repeat:no-repeat;
 
-
}
 
-
a.navPartners:hover{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/b/ba/Partners_bdx.png") 0 116px;
 
-
}
 
-
a.navPartners_a{
 
-
 
-
background: url("https://static.igem.org/mediawiki/2012/b/ba/Partners_bdx.png") 0 58px;
 
-
}
 
-
 
-
.firstHeading {
 
-
  display: none;
 
-
}
 
-
 
-
body {
 
-
  background-color: #6c131d ;
 
-
  text-align: justify;
 
-
}
 
-
 
-
section{
 
-
font-family: 'Lekton', Arial, serif;
 
-
display: inline-block;   
 
-
width: 975px;
 
-
vertical-align: top;
 
-
}
 
-
 
-
#container {
 
-
width:580px;
 
-
padding:100px;
 
-
margin:0 auto;
 
-
position:relative;
 
-
z-index:0;
 
-
}
 
-
 
-
#example {
 
-
width:600px;
 
-
height:350px;
 
-
position:relative;
 
-
}
 
-
 
-
#ribbon {
 
-
position:absolute;
 
-
top:-3px;
 
-
left:-15px;
 
-
z-index:500;
 
-
}
 
-
 
-
#frame {
 
-
position:absolute;
 
-
z-index:0;
 
-
width:739px;
 
-
height:341px;
 
-
top:-3px;
 
-
left:-80px;
 
-
}
 
-
 
-
/*
 
-
Slideshow
 
-
*/
 
-
 
-
#slides {
 
-
position:absolute;
 
-
top:15px;
 
-
left:4px;
 
-
z-index:100;
 
-
}
 
-
 
-
/*
 
-
Slides container
 
-
Important:
 
-
Set the width of your slides container
 
-
Set to display none, prevents content flash
 
-
*/
 
-
 
-
.slides_container {
 
-
width:570px;
 
-
overflow:hidden;
 
-
position:relative;
 
-
display:none;
 
-
}
 
-
 
-
/*
 
-
Each slide
 
-
Important:
 
-
Set the width of your slides
 
-
If height not specified height will be set by the slide content
 
-
Set to display block
 
-
*/
 
-
 
-
.slides_container div.slide {
 
-
width:570px;
 
-
height:270px;
 
-
display:block;
 
-
}
 
-
 
-
 
-
/*
 
-
Next/prev buttons
 
-
*/
 
-
 
-
#slides .next,#slides .prev {
 
-
position:absolute;
 
-
top:107px;
 
-
left:-39px;
 
-
width:24px;
 
-
height:43px;
 
-
display:block;
 
-
z-index:101;
 
-
}
 
-
 
-
#slides .next {
 
-
left:585px;
 
-
}
 
-
 
-
/*
 
-
Pagination
 
-
*/
 
-
 
-
.pagination {
 
-
margin:26px auto 0;
 
-
width:100px;
 
-
}
 
-
 
-
.pagination li {
 
-
float:left;
 
-
margin:0 1px;
 
-
list-style:none;
 
-
}
 
-
 
-
.pagination li a {
 
-
display:block;
 
-
width:12px;
 
-
height:0;
 
-
padding-top:12px;
 
-
background-image:url(https://static.igem.org/mediawiki/2012/a/af/Pagination.png);
 
-
background-position:0 0;
 
-
float:left;
 
-
overflow:hidden;
 
-
}
 
-
 
-
.pagination li.current a {
 
-
background-position:0 -12px;
 
-
}
 
-
 
-
/*
 
-
Caption
 
-
*/
 
-
 
-
.caption {
 
-
z-index:500;
 
-
position:absolute;
 
-
bottom:-35px;
 
-
left:0;
 
-
height:30px;
 
-
padding:5px 20px 0 20px;
 
-
background:#000;
 
-
background:rgba(0,0,0,.5);
 
-
width:540px;
 
-
font-size:1.3em;
 
-
line-height:1.33;
 
-
color:#fff;
 
-
border-top:1px solid #000;
 
-
text-shadow:none;
 
-
}
 
-
 
-
</style>
 
-
 
-
 
-
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.5.1/jquery.min.js"></script>
 
-
<script src="http://cdjemiel.free.fr/js/slides.min.jquery.js"></script>
 
-
<script src="http://cdjemiel.free.fr/js/slide.js"></script>
 
-
 
-
 
-
<!-- Main Navigation -->
 
-
<div class="nav_container">
 
-
<ul id="navMenu">
 
-
<li class="first"></li>
 
-
<li><a href="https://2012.igem.org/Team:Bordeaux" class="navHome" title="Home"></a></li>
 
-
<li><a href="https://2012.igem.org/Team:Bordeaux/Team" class="navTeam" title="Team"></a></li>
 
-
<li><a href="https://2012.igem.org/Team:Bordeaux/Project" class="navProject" title="Project"></a></li>
 
-
                <li><a href="https://2012.igem.org/Team:Bordeaux/essai" class="navModelling" title="Modelling"></a></li>
 
-
<li><a href="https://2012.igem.org/Team:Bordeaux/Test" class="navBiology" title="Biology"></a></li>
 
-
<li><a href="https://2012.igem.org/Team:Bordeaux/Partners" class="navPartners" title="Partners"></a></li>
 
-
            <li class="last"></li>
 
-
    </ul>
 
-
</div>
 
-
 
<body>
<body>
 +
<header>
 +
<nav>
 +
<div class="container">
 +
<div class="wrapper">
 +
<h1><a href="https://2012.igem.org/Team:Bordeaux"><strong>iGEM</strong>Bordeaux 2012</a></h1>
 +
<ul>
 +
<li><a href="https://2012.igem.org/Team:Bordeaux/Team">team</a></li>
 +
<li><a href="https://2012.igem.org/Team:Bordeaux/Project">project</a></li>
 +
<li><a href="https://2012.igem.org/Team:Bordeaux/Modelling">modelling</a></li>
 +
<li><a href="https://2012.igem.org/Team:Bordeaux/Biology">biology</a></li>
 +
<li><a href="https://2012.igem.org/Team:Bordeaux/Partners">partners</a></li>
 +
<li><a href="https://2012.igem.org/Team:Bordeaux/Contacts">contacts</a></li>
 +
</ul>
 +
</div>
 +
</div>
 +
</nav>
 +
<section class="adv-content">
 +
<div class="container">
 +
<ul class="breadcrumbs">
 +
<li>Home</li>
 +
</ul>
 +
 +
</div>
 +
</section><div class="ic"></div>
 +
</header>
 +
<section id="content">
 +
<div class="top">
 +
<div class="container">
 +
<div class="clearfix">
 +
<section id="gallery">
 +
<div class="pics">
 +
<a href="https://static.igem.org/mediawiki/2012/1/1e/Plaquette.pdf" target="_blanck"><img src="https://static.igem.org/mediawiki/2012/2/22/Slide-plaquette.png" alt="" width="495" height="329"></a>
 +
<a href="https://2012.igem.org/Team:Bordeaux/Introduction"><img src="https://static.igem.org/mediawiki/2012/5/50/Fungus.png" alt="" width="495" height="329"></a>
 +
<a href="https://2012.igem.org/Team:Bordeaux/Modelling"><img src="http://cdjemiel.free.fr/igem2012/images/my_gif.GIF" alt="" width="495" height="329"></a>
 +
</div>
 +
<a href="#" id="prev"></a>
 +
<a href="#" id="next"></a>
 +
<p><a href="https://static.igem.org/mediawiki/2012/1/1e/Plaquette.pdf" target="_blanck" class="more">Download French Booklet</a></p>
 +
</section>
 +
<section id="intro">
 +
<div class="inner">
 +
<h2>Results - Jamboree - Amsterdam</h2>
 +
<p>
 +
The Bordeaux team won a bronze medal. See you next year and we want you. You can contact us by email
 +
<strong>
 +
<a href="mailto:contact@igem-bordeaux.com">contact@igem-bordeaux.com</a>
 +
</strong>
 +
</p>
 +
<p><a href="http://www.ufrsdv.u-bordeaux2.fr/cmsufrsdv/wp-content/uploads/2012/10/IGEM-recrute.pdf" target="_blanck" class="more">Download Poster We want you</a></p>
-
<div id="container">
+
<h2>Synthetic Biology<br/> Bordeaux Project <span>Summary</span></h2>
-
<div id="example">
+
<p>Our project aims at reproducing multicellular-like behavior in the bacteria Escherichia coli. The idea came from the patterns visible on some animals, like the “pseudo-eyes” on a butterfly wing. As well, we thought about the formation of stripes on tigers or zebra. Such patterns are created thanks to a very precise genetic regulation. So what we want to do here is modeling a regulation mechanism existing in eukaryotes in a simple organism. The bacteria will share the same DNA but should be able to display a different phenotype depending on the signal received by its neighbors. The phenotype here will be the expression of three different colors. The bacteria should be able to communicate between them. A light signal is used as the first inducer of our mechanism. Then, the first cells activated by the input signal send a signal to its neighbor that will react to it by changing its color, and sending another message to the next cell. This will allow us to draw different patterns on the petri dish. </p>
-
<img src="https://static.igem.org/mediawiki/2012/5/52/Biology-ribbon.png" width="112" height="112" alt="New Ribbon" id="ribbon">
+
<a href="https://2012.igem.org/Team:Bordeaux/Biology" class="extra-button">Read More</a>
-
<div id="slides">
+
-
<div class="slides_container">
+
-
<div class="slide">
+
-
<a href="https://static.igem.org/mediawiki/2012/1/1e/Plaquette.pdf" title="Plaquette_bdx" target="_blank"><img src="https://static.igem.org/mediawiki/2012/2/22/Slide-plaquette.png" width="570" height="270" alt="Plaquette_bordeaux"></a>
+
-
<div class="caption" style="bottom:0">
+
-
<p>Dossier de partenariat FR !</p>
+
</div>
</div>
 +
</section>
 +
</div>
 +
</div>
 +
</div>
 +
<div class="middle">
 +
<div class="container">
 +
<div class="wrapper">
 +
<div class="grid9">
 +
<h2>Modelling - Python - Script</h2>
 +
<p>Our IGEM project aim to create a regulation system into the bacteria (a strain of Escherichia coli). The goal of that project is to have just one strain of bacteria able to create concentric patterns on flat surfaces. The challenge consist of modeling a regulation mecanism that mimic the cellular differentiation and cellular communication seen with eucaryotes.
 +
</p>
 +
<p>
 +
We have first decided to make a modeling and simulation software of that regulation system. This first step will permit us to test several parameters and try some variations of the concentration and others factors involved (reduction of the activity of some operon, etc ). This parts we hope will give us the best conditions for our next biological manipulations.</p>
 +
<p><a href="https://2012.igem.org/Team:Bordeaux/Modelling" class="more">Read More</a></p>
 +
 +
</div>
</div>
-
+
</div>
-
<div class="slide">
+
</div>
-
<a href="#" title="#" target="_blank"><img src="https://static.igem.org/mediawiki/2012/a/ae/Slide-construction.png" width="570" height="270" alt="Slide 2"></a>
+
</div>
-
<div class="caption">
+
<div class="bottom">
-
<p>En cours de réalisation !</p>
+
<div class="container">
-
</div>
+
<div class="wrapper">
 +
<div class="grid3 first">
 +
<h3>Partners</h3>
 +
<ul class="list1">
 +
<li><a href="http://www.iecb.u-bordeaux.fr/" title="IECB" target="_blank">IECB</a></li>
 +
<li><a href="http://ambafrance-us.org/spip.php?article415" title="Mst" target="_blank">AmbaFrance-us</a></li>
 +
<li><a href="http://www.labri.fr/" title="LaBRI" target="_blank">LaBRI</a></li>
 +
<li><a href="http://www.thermoscientific.com/" title="Thermo_scientific" target="_blank">Thermo Scientific</a></li>
 +
<li><a href="http://www.univ-bordeaux.fr/" title="NUB" target="_blank">Université de Bordeaux</a></li>
 +
</ul>
 +
</div>
 +
<div class="grid3">
 +
<h3>Project</h3>
 +
<ul class="list2">
 +
<li><a href="#">Overview</a></li>
 +
<li><a href="#">Introduction</a></li>
 +
<li><a href="#">Biobricks</a></li>
 +
</ul>
 +
</div>
 +
<div class="grid3">
 +
<h3>Others</h3>
 +
<ul class="list2">
 +
<li><a href="#">Other</a></li>
 +
</ul>
 +
</div>
 +
<div class="grid3">
 +
<div id="datepicker"></div>
</div>
</div>
-
 
</div>
</div>
-
<a href="#" class="prev"><img src="https://static.igem.org/mediawiki/2012/f/f1/Prev.png" width="24" height="43" alt="Arrow Prev"></a>
 
-
<a href="#" class="next"><img src="https://static.igem.org/mediawiki/2012/c/c4/Next.png" width="24" height="43" alt="Arrow Next"></a>
 
</div>
</div>
-
<img src="https://static.igem.org/mediawiki/2012/8/8b/Example-frame.png" width="739" height="341" alt="Example Frame" id="frame">
 
</div>
</div>
-
 
+
</section>
 +
<footer>
 +
<div class="container">
 +
<div class="wrapper">
 +
<div class="copy">iGEM Bordeaux Team (c) 2012 |</div>
 +
<address class="phone">
 +
You can contact us by email or phone :
 +
<strong>
 +
<a href="mailto:igem-bordeaux2-2012@googlegroups.com">igem-bordeaux2-2012@googlegroups.com</a> or +33(0)5 4000 8404
 +
</strong>
 +
</address>
 +
</div>
 +
</div>
 +
</footer>
 +
<script type="text/javascript">
 +
$(document).ready(function() {
 +
$('.pics').cycle({
 +
fx: 'toss',
 +
next: '#next',
 +
prev: '#prev'
 +
});
 +
 +
// Datepicker
 +
$('#datepicker').datepicker({
 +
inline: true
 +
});
 +
 +
});
 +
</script>
 +
</body>
</html>
</html>

Latest revision as of 15:02, 20 October 2012

Home - iGEM Bordeaux 2012

Results - Jamboree - Amsterdam

The Bordeaux team won a bronze medal. See you next year and we want you. You can contact us by email contact@igem-bordeaux.com

Download Poster We want you

Synthetic Biology
Bordeaux Project Summary

Our project aims at reproducing multicellular-like behavior in the bacteria Escherichia coli. The idea came from the patterns visible on some animals, like the “pseudo-eyes” on a butterfly wing. As well, we thought about the formation of stripes on tigers or zebra. Such patterns are created thanks to a very precise genetic regulation. So what we want to do here is modeling a regulation mechanism existing in eukaryotes in a simple organism. The bacteria will share the same DNA but should be able to display a different phenotype depending on the signal received by its neighbors. The phenotype here will be the expression of three different colors. The bacteria should be able to communicate between them. A light signal is used as the first inducer of our mechanism. Then, the first cells activated by the input signal send a signal to its neighbor that will react to it by changing its color, and sending another message to the next cell. This will allow us to draw different patterns on the petri dish.

Read More

Modelling - Python - Script

Our IGEM project aim to create a regulation system into the bacteria (a strain of Escherichia coli). The goal of that project is to have just one strain of bacteria able to create concentric patterns on flat surfaces. The challenge consist of modeling a regulation mecanism that mimic the cellular differentiation and cellular communication seen with eucaryotes.

We have first decided to make a modeling and simulation software of that regulation system. This first step will permit us to test several parameters and try some variations of the concentration and others factors involved (reduction of the activity of some operon, etc ). This parts we hope will give us the best conditions for our next biological manipulations.

Read More