Team:Amsterdam/extra/software

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<h1>Software</h1>
<h1>Software</h1>
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The complexity of biology calls for the aid of computers in a synthetic biology design process.
The complexity of biology calls for the aid of computers in a synthetic biology design process.
Over the summer we have created a range of useful applications to make the life of the synthetic biologist easier.
Over the summer we have created a range of useful applications to make the life of the synthetic biologist easier.
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<h2>Local MediaWiki Editor</h2>
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<h2>Local MediaWiki Editor 0.1</h2>
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[https://github.com/mreijnders/Local-MediaWiki Click here to retrieve the Local MediaWiki Editor]
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Also tired of using the MediaWiki standard interface for editing? Check out the script we made to make a local copy of the MediaWiki directory structure! It contains features such as uploading/downloading newer files and it works with any editor. <b>Use at your own risk though!</b> since its all automated a settup mistake can result in loss or pollution of data on your wiki.<br>
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[https://github.com/mreijnders/Local-MediaWiki You can check it out here at git-hub]
<h2>DNA Template Compiler</h2>
<h2>DNA Template Compiler</h2>
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Creating custom sequences of DNA is a none trivial task. It requires checks for example RFC-10 forbidden sites, <i>E. coli</i> native restiction and GC contents optimization. This is why we create a script compiles a specially formatted DNA template file into a custom sequences that has been checked and optimized for these parameters.  
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Creating custom sequences of DNA is a none trivial task. It requires checks for example RFC-10 forbidden sites, <i>E. coli</i> native restiction and GC contents optimization. This is why we create a script compiles a specially formatted DNA template file into a custom sequences that has been checked and optimized for these parameters.<br>
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[https://github.com/mreijnders/DNA-Template-Compiler Click here to check the DNA Template Compiler out at github!]
[https://github.com/mreijnders/DNA-Template-Compiler Click here to check the DNA Template Compiler out at github!]

Latest revision as of 03:56, 27 September 2012