Team/CINVESTAV-IPN-UNAM MX/Tools.htm

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      <p><strong>Wolfram  Research Mathematica</strong></p>
 
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      <p><br />
 
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        Mathematica is a general computer  software system and language intended for mathematical and other applications. You  can use Mathematica as: A numerical and symbolic calculator where you type in  questions, and Mathematica prints out answers, a visualization system for  functions and data, a high-level programming language in which you can create  programs, large and small ones. and a modeling and data analysis environment.</p>
 
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      <p><br />
 
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        <strong>Rule-Based  Modeling of Biochemical Systems with BioNetGen</strong><br />
 
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      </p>
 
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      <p>Rule-based modeling involves the  representation of molecules as structured objects and molecular interactions as  rules for transforming the attributes of these objects.  The approach is notable in that it allows one  to systematically incorporate site-specific details about protein-protein  interactions into a model. BioNetGen allows a user to create a computational  model that characterizes the dynamics of a signal transduction system, and that  accounts comprehensively and precisely for specified enzymatic activities,  potential post-translational modifications and interactions of the domains of  signaling molecules. The output defines and parameterizes the network of  molecular species that can arise during signaling and provides functions that  relate model variables to experimental readouts of interest. Models that can be  generated are relevant for rational drug discovery, analysis of proteomic data  and mechanistic studies of signal transduction.</p>
 
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        <p><br />
 
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        <strong>For further details go to:</strong></p>
 
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        <p><a href="http://bionetgen.org" target="_blank"><strong>http://bionetgen.org</strong><img src="images/mate2.jpg" width="75" height="62" /></a></p>
 
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        <p><strong><a href="http://demonstrations.wolfram.com/" target="_blank">http://demonstrations.wolfram.com/</a> </strong> <img src="images/mate.jpg" width="91" height="67" /></p>
 
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Revision as of 21:42, 26 October 2012