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Team:LMU-Munich/Project
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=== Clone Vectors === | === Clone Vectors === | ||
| - | Part of establishing ''Bacillus subtilis'' to the BioBrick mode is to modify standard vectors of ''Bacillus''. We mutate prohibited restriction sites (EcoRI, XbaI, SpeI, PstI) and excise redundant parts of the vectors. | + | Part of establishing ''Bacillus subtilis'' to the BioBrick mode is to modify standard vectors of ''Bacillus''. We will mutate prohibited restriction sites (EcoRI, XbaI, SpeI, PstI) and excise redundant parts of the vectors. |
=== Evaluate Promoters === | === Evaluate Promoters === | ||
Revision as of 19:28, 23 April 2012
The LMU-Munich team is exuberantly happy about the great success at the World Championship Jamboree in Boston. Our project Beadzillus finished 4th and won the prize for the "Best Wiki" (with Slovenia) and "Best New Application Project".
[ more news ]
Overall project
The goal of our project BEADzillus is the production of Bacillus subtilis spores which display different proteins with special features on their surface. For example, the spore could:
- bind harmful viruses
- bind toxic metals
- bind plastic molecules
- expose enzymes
These functions could be used to filter fluids or for use in laboratory.
As a safety consideration, we will stop spores from germinating. First, we want to knock out several genes which are important for germination from the spore phase; second, we want potentially germinating spores to be killed by a toxin which they produce themselves.
Project Details
Clone Vectors
Part of establishing Bacillus subtilis to the BioBrick mode is to modify standard vectors of Bacillus. We will mutate prohibited restriction sites (EcoRI, XbaI, SpeI, PstI) and excise redundant parts of the vectors.
Evaluate Promoters
Another goal is to produce promoters of Bacillus subtilis in BioBrick mode and to evaluate them. We will amplify them from the Bacillus genome and clone them upstream of reporter genes (GFP, lux operon, lacZ) to measure their activity in Bacillus subtilis.
Fuse Spore Coat Proteins
There are several different coat proteins in the spores of Bacillus subtilis. We chose CotZ and CgeA, which are located in the outermost layer of the spore coat. Our first step will be to fuse GFP to these proteins to see if they appear on the spore surface and if there is any effect on spore formation. The next step will be to fuse proteins with special features to CotZ and CgeA to produce functional "SporoBeads." SporoBeads could be used to filter fluids or in the laboratory, and could be capable of:
- binding harmful viruses
- binding toxic metals
- binding plastic molecules
- exposing enzymes
Stop Germination
To stop the „SporoBeads“ from germination, we thought of two different manipulations. First, we knock-out several genes which are necessary for all germination pathways, namely the cortex hydrolysis. Several gene deletion combinations will be tested for their outgrowth rates.
As a second mechanism, spores which begin to germinate despite the gene deletions shall be killed by an endotoxin system. Here, we work with a sigma-factor from a different species which works in Bacillus subtilis but does not interfere with endogenous promoters. This sigma factor is placed downstream of a promoter that is strongly activated by sigmaG , the last active sigma factor in the endospore. Therefore, the alternative sigma factor is produced right before sporulation. The bacteria also have a second construct inserted into their genome: a promoter activated by the alternative sigma factor which leads to the transcription of an endotoxin. So, if a spore starts metabolism, the toxin gene will be activated and kill the outgrowing spore.
Results
