Team:University College London/Research
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== Project Overview == | == Project Overview == | ||
- | In many of the | + | In many of the world's oceans, currents carry debris and pollution originating from coastlines. This waste accumulates in regional gyres - where ocean currents meet, and can reach extremely high concentrations. Plastic is estimated to account for 60-80% of this debris, and is known to be gradually broken down by solar energy and the mechanical action of the sea. This means the majority of the plastic waste are several millimetres in diameter or less, which has made efforts to clean them from the ocean largely unsuccessful. These tiny plastic fragments - microplastics - enter the digestive systems of resident organisms, which are affected either by the physical size of the plastic or its toxicity from adsorbing organic pollutants. |
- | UCL iGEM proposes a synthetic biology approach for the bioremediation of micro-plastic pollutants within the marine environment, with emphasis on regions of excessive debris accumulation, such as the North Pacific | + | UCL iGEM proposes a synthetic biology approach for the bioremediation of micro-plastic pollutants within the marine environment, with emphasis on regions of excessive debris accumulation, such as the 'Great pacific garbage patch’ in the North Pacific gyre. |
- | We intend to engineer ''Escherichia coli'' and marine bacteria ''Roseobacter denitrifican''s & ''Oceanibulbus indolifex'' to degrade plastic, or aggregate it | + | We intend to engineer ''Escherichia coli'' and marine bacteria ''Roseobacter denitrifican''s & ''Oceanibulbus indolifex'' to degrade plastic, or aggregate it for collection. |
- | == | + | == Detection Module == |
+ | '''Detection of plastics as a trigger for the Aggregation module''' | ||
- | + | Our Detection module will allow our bacteria to detect the presence of plastic. This serves to control the production of our adhesive – curli fibrins – which binds non-specifically to an extraordinary array of surfaces. By producing adhesive only when plastic is present, we prevent our bacteria binding to non-plastic materials. | |
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- | Our Detection | + | |
== Aggregation Module == | == Aggregation Module == | ||
- | '''Curli expression for the aggregation of plastic and production of biofilm | + | '''Curli expression for the aggregation of plastic and production of biofilm''' |
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- | The Aggregation Module | + | The Aggregation Module confers onto our bacteria the means of plastic adhesion. To implement this we have decided to transform our bacteria with a genetic circuit to produce adhesive proteins called curlis. As curlis are non-specific in the surfaces they bind to, the Detection module will limit their production, unless they are in the presence of plastics. |
== Plastic Degradation == | == Plastic Degradation == | ||
- | '''Multi-copper oxidase/Laccase for the degradation of polyethylene | + | '''Multi-copper oxidase/Laccase for the degradation of polyethylene''' |
- | As an alternative to | + | As an alternative to the Aggregation system, we are also developing an alternative solution – the degradation of plastic. This will investigate enzymes expressed by numerous organisms that have been demonstrated to degrade plastics. |
==Buoyancy Module== | ==Buoyancy Module== | ||
- | ''' | + | '''Glucose concentration dependent buoyancy for localisation of engineered bacteria within the water column ''' |
- | The Buoyancy | + | The Buoyancy module is key to both the Degradation and the Aggregation systems. Buoyancy is required to position our bacteria in the water column, alongside the plastic fragments, and also to enable them to buoy the plastic aggregates. |
==Salt Tolerance== | ==Salt Tolerance== | ||
- | ''' | + | '''IrrE a global regulator from ''Deinococcus radiodurans'' for increased salinity tolerance in ''E. coli''''' |
- | A core module for our project is enabling E.coli to tolerate the salt content of the ocean; without this ability E.coli could not survive in a marine environment. Due to the widespread use of E.coli as a chassis for | + | A core module for our project is enabling ''E. coli'' to tolerate the salt content of the ocean; without this ability ''E. coli'' could not survive in a marine environment. Due to the widespread use of ''E. coli'' as a chassis for synthetic biology, this module is being developed to demonstrate that ''E. coli'', as well as marine bacteria, could be used as the chassis for this project. |
==Containment Components== | ==Containment Components== | ||
- | + | '''A novel threefold active biological containment system''' | |
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- | '''A novel threefold active biological containment system | + | |
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- | + | UCL iGEM 2012 addresses fundamental barriers to the implementation of traditional biological containment systems. As our project proposes the release of genetically modified bacterium into the environment, we feel it is necessary to contain the risk of spreading genetic information by horizontal gene transfer. To do so we are suggesting a periplasmic nuclease system in order to degrade genetic material in the surrounding area. | |
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+ | A multi-containment system, consisting of three toxin/anti-toxin pairs - Holin / Anti-Holin Endolysin, Colicin-E3 / Colicin Immunity E3, and Endunuclease EcoRI / Methyltransferase EcoRI will also be considered in our containment system. | ||
{{:Team:University_College_London/templates/foot}} | {{:Team:University_College_London/templates/foot}} |
Latest revision as of 23:15, 26 October 2012
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Contents |
Project Overview
In many of the world's oceans, currents carry debris and pollution originating from coastlines. This waste accumulates in regional gyres - where ocean currents meet, and can reach extremely high concentrations. Plastic is estimated to account for 60-80% of this debris, and is known to be gradually broken down by solar energy and the mechanical action of the sea. This means the majority of the plastic waste are several millimetres in diameter or less, which has made efforts to clean them from the ocean largely unsuccessful. These tiny plastic fragments - microplastics - enter the digestive systems of resident organisms, which are affected either by the physical size of the plastic or its toxicity from adsorbing organic pollutants.
UCL iGEM proposes a synthetic biology approach for the bioremediation of micro-plastic pollutants within the marine environment, with emphasis on regions of excessive debris accumulation, such as the 'Great pacific garbage patch’ in the North Pacific gyre.
We intend to engineer Escherichia coli and marine bacteria Roseobacter denitrificans & Oceanibulbus indolifex to degrade plastic, or aggregate it for collection.
Detection Module
Detection of plastics as a trigger for the Aggregation module
Our Detection module will allow our bacteria to detect the presence of plastic. This serves to control the production of our adhesive – curli fibrins – which binds non-specifically to an extraordinary array of surfaces. By producing adhesive only when plastic is present, we prevent our bacteria binding to non-plastic materials.
Aggregation Module
Curli expression for the aggregation of plastic and production of biofilm
The Aggregation Module confers onto our bacteria the means of plastic adhesion. To implement this we have decided to transform our bacteria with a genetic circuit to produce adhesive proteins called curlis. As curlis are non-specific in the surfaces they bind to, the Detection module will limit their production, unless they are in the presence of plastics.
Plastic Degradation
Multi-copper oxidase/Laccase for the degradation of polyethylene
As an alternative to the Aggregation system, we are also developing an alternative solution – the degradation of plastic. This will investigate enzymes expressed by numerous organisms that have been demonstrated to degrade plastics.
Buoyancy Module
Glucose concentration dependent buoyancy for localisation of engineered bacteria within the water column
The Buoyancy module is key to both the Degradation and the Aggregation systems. Buoyancy is required to position our bacteria in the water column, alongside the plastic fragments, and also to enable them to buoy the plastic aggregates.
Salt Tolerance
IrrE a global regulator from Deinococcus radiodurans for increased salinity tolerance in E. coli
A core module for our project is enabling E. coli to tolerate the salt content of the ocean; without this ability E. coli could not survive in a marine environment. Due to the widespread use of E. coli as a chassis for synthetic biology, this module is being developed to demonstrate that E. coli, as well as marine bacteria, could be used as the chassis for this project.
Containment Components
A novel threefold active biological containment system
UCL iGEM 2012 addresses fundamental barriers to the implementation of traditional biological containment systems. As our project proposes the release of genetically modified bacterium into the environment, we feel it is necessary to contain the risk of spreading genetic information by horizontal gene transfer. To do so we are suggesting a periplasmic nuclease system in order to degrade genetic material in the surrounding area.
A multi-containment system, consisting of three toxin/anti-toxin pairs - Holin / Anti-Holin Endolysin, Colicin-E3 / Colicin Immunity E3, and Endunuclease EcoRI / Methyltransferase EcoRI will also be considered in our containment system.